Stem-loop sequence mtr-MIR156e

Accession

MI0005595 (change log)

Description

Medicago truncatula miR156e stem-loop

Gene family

MIPF0000008; MIR156

Literature search

10 open access papers mention mtr-MIR156e
(78 sentences)

Stem-loop

      u u         -              u  -          uuauauauauauauauauauauauauauauauauauauauau 
5' ggu g ugacagaag auagagagcacaga ga ugauaugcau                                          a
   ||| | ||||||||| |||||||||||||| || ||||||||||                                          u
3' cca c acugucuuc uaucucucguguuu cu acuauacgug                                          a
      - u         g              c  c          uuuuaaguagagguacgucgaggucgaggaguauauauauau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr8: 31820126-31820297 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0005595

Mature sequence mtr-miR156e

• Accession: MIMAT0011081
• Sequence: 6 - uugacagaagauagagagcac - 26
• Evidence: experimental; 454 [2], Northern [2]

References

1. " Bonnet E Unpublished (2007).
2. PMID:19555436 "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families" Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R New Phytol. 184:85-98(2009).