miRBase entry: mtr-MIR398a

Stem-loop mtr-MIR398a


Accession
MI0005599
Description
Medicago truncatula mtr-MIR398a precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
4 open access papers mention mtr-MIR398a
(10 sentences)

Sequence

ucucagaGGAGUGACACUGAGAACACAAGauugauuaaucauauaauguauuugguuguuacuaguugauuuUGUGUUCUCAGGUCACCCCUUugagu
.((((((((.(((((.(((((((((((((((((((((.....(((((.......)))))...)))))))))))))))))))))))))).)))))))).

Structure
u        A     A                     aucau     gu 
 cucagaGG GUGAC CUGAGAACACAAGauugauua     auaau  a
 |||||||| ||||| |||||||||||||||||||||     |||||  u
 gaguUUCC CACUG GACUCUUGUGUuuuaguugau     uguug  u
u        C     -                     --cau     gu 


Annotation confidence Not enough data
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Genome context
chr5: 18765673-18765770 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR398a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR398a-3p

Accession MIMAT0011085
Description Medicago truncatula mtr-miR398a-3p mature miRNA
Sequence 73 - UGUGUUCUCAGGUCACCCCUU - 93
Evidence experimental
Northern [2]

Mature mtr-miR398a-5p

Accession MIMAT0022935
Description Medicago truncatula mtr-miR398a-5p mature miRNA
Sequence 8 - GGAGUGACACUGAGAACACAAG - 29
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 19555436
    Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
    "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
    "New Phytol (2009) 184:85-98


  2. "Bonnet E"
    (2007) None:

  3. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553