Stem-loop sequence mtr-MIR172a

Accession

MI0005600 (change log)

Previous IDs

mtr-MIR172

Description

Medicago truncatula miR172 stem-loop

Gene family

MIPF0000035; MIR172

Literature search

7 open access papers mention mtr-MIR172a
(30 sentences)

Stem-loop

   -  c g  g                a  ag  u ug       u         u  u 
5'  gc g ug agcaucaucaggauuc ca  au u  aaggguu aauuuguuu ga u
    || | || |||||||||||||||| ||  || |  ||||||| ||||||||| || g
3'  cg c ac ucguaguaguccuaag gu  ua a  uucccga uuagauaaa cu u
   a  u g  g                a  -a  c gu       -         -  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 33265814-33265926 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0005600

Mature sequence mtr-miR172a

• Accession: MIMAT0011086
• Previous IDs: mtr-miR172
• Sequence: 88 - agaauccugaugaugcugcag - 108
• Evidence: experimental; 454 [2], Northern [2]

References

1. " Bonnet E Unpublished (2007).
2. PMID:19555436 "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families" Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R New Phytol. 184:85-98(2009).