miRBase entry: mtr-MIR172a

Stem-loop mtr-MIR172a


Accession
MI0005600
Description
Medicago truncatula mtr-MIR172a precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
7 open access papers mention mtr-MIR172a
(30 sentences)

Sequence

gccgguggagcaucaucaggauucacaagauuuugaaggguuuaauuuguuuugauuguuucaaauagauuagcccuuugacauaugAGAAUCCUGAUGAUGCUGCAGcugca
((.(.((.((((((((((((((((.((..((.((((((((((.(((((((((.((.....))))))))))))))))))))).)).)).)))))))))))))))).)).).)).

Structure
-  c g  g                a  ag  u          u         u  u 
 gc g ug agcaucaucaggauuc ca  au uugaaggguu aauuuguuu ga u
 || | || |||||||||||||||| ||  || |||||||||| ||||||||| || g
 cg c AC UCGUAGUAGUCCUAAG gu  ua aguuucccga uuagauaaa cu u
a  u G  G                A  -a  c          -         -  u 


Annotation confidence Not enough data
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Genome context
chr5: 33265814-33265926 [-]

Database links

Mature mtr-miR172a

Accession MIMAT0011086
Description Medicago truncatula mtr-miR172a mature miRNA
Sequence 88 - AGAAUCCUGAUGAUGCUGCAG - 108
Evidence experimental
454 [2], Northern [2]

References

  1. PubMed ID: 19555436
    Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
    "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
    "New Phytol (2009) 184:85-98


  2. "Bonnet E"
    (2007) None: