Stem-loop mtr-MIR393b

Accession

MI0005601

Description

Medicago truncatula mtr-MIR393b precursor miRNA

Gene family

MIPF0000083; MIR393

Literature search

4 open access papers mention mtr-MIR393b
(8 sentences)

Sequence

aggcaUCCAAAGGGAUCGCAUUGAUCccaaaucuaauuaagucccuagcuacuuaauuaacaacuuaauuuccuuaauaucucauaauaUUUGGGAUCAUGCUAUCCCUUuggauucau
.((.((((((((((((.((((.((((((((((.(((((((((........))))))))).............................)))))))))))))).))))))))))))))..

Structure

-a  c            C    U          ----------------------------c         ccc 
  gg aUCCAAAGGGAU GCAU GAUCccaaau                             uaauuaagu   u
  || |||||||||||| |||| ||||||||||                             |||||||||    
  cu uagguUUCCCUA CGUA CUAGGGUUUa                             auuaauuca   a
ua  -            U    -          uaauacucuauaauuccuuuaauucaaca         ucg 

Annotation confidence Not enough data

Genome context

chr5: 33945918-33946036 [+]

Mature mtr-miR393b-5p

• Accession: MIMAT0011087
• Description: Medicago truncatula mtr-miR393b-5p mature miRNA
• Sequence: 6 - UCCAAAGGGAUCGCAUUGAUC - 26
• Evidence: experimental ; Northern [2]

Mature mtr-miR393b-3p

• Accession: MIMAT0022936
• Description: Medicago truncatula mtr-miR393b-3p mature miRNA
• Sequence: 90 - UUUGGGAUCAUGCUAUCCCUU - 110
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None:


3. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553