Stem-loop sequence mtr-MIR168a

Accession

MI0005603 (change log)

Previous IDs

mtr-MIR168

Description

Medicago truncatula miR168 stem-loop

Gene family

MIPF0000081; MIR168

Literature search

6 open access papers mention mtr-MIR168a
(23 sentences)

Stem-loop

           c       u  u    aa   --    --auccac      c 
5' cugauuug uuggugc gg cggg  cca  uuac        aguuuc g
   |||||||| ||||||| || ||||  |||  ||||        ||||||  
3' gacuaagc aacuacg uc gccc  ggu  aaug        ucaaag u
           u       u  u    ca   ua    auucccuu      a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 41779400-41779497 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0005603

Mature sequence mtr-miR168a

• Accession: MIMAT0011089
• Previous IDs: mtr-miR168
• Sequence: 6 - uugcuuggugcuggucgggaa - 26
• Evidence: experimental; 454 [2], Northern [2]

References

1. " Bonnet E Unpublished (2007).
2. PMID:19555436 "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families" Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R New Phytol. 184:85-98(2009).