miRBase entry: mtr-MIR399m

Stem-loop mtr-MIR399m


Accession
MI0005608
Description
Medicago truncatula mtr-MIR399m precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
9 open access papers mention mtr-MIR399m
(25 sentences)

Sequence

agucauagggcaugucucuauuggcaggugauauagugauauggcucuagaaauucacuUGCCAAAGGAGAGCUGCCCUAugaau
..((((((((((..(((((.(((((((((((..(((.(......).))).....))))))))))).)))))..))))))))))..

Structure
ag          ug     a           ---ua   u au 
  ucauagggca  ucucu uuggcagguga     uag g  a
  ||||||||||  ||||| |||||||||||     ||| |   
  aguAUCCCGU  AGAGG AACCGUucacu     auc c  u
ua          CG     A           uaaag   u gg 


Annotation confidence Not enough data
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Genome context
chr6: 21530943-21531027 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR399m
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR399m

Accession MIMAT0011094
Description Medicago truncatula mtr-miR399m mature miRNA
Sequence 60 - UGCCAAAGGAGAGCUGCCCUA - 80
Evidence not_experimental

References


  1. "Bonnet E"
    (2007) None: