Stem-loop mtr-MIR156h

Accession

MI0005613

Description

Medicago truncatula mtr-MIR156h precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

10 open access papers mention mtr-MIR156h
(77 sentences)

Sequence

ugcugUUGACAGAAGAUAGAGAGCACagaugaugaaaugcauggaaggcaauggcaucucauuccuuuguGCUCUUUAUUCUUCUGUCAUCacc
...((.(((((((((((((((((((((((.(((((.((((.((.....))...)))).)))))..))))))))))))).)))))))))).))..

Structure

ugc  U          -             -u     a    --a  g 
   ug UGACAGAAGA UAGAGAGCACaga  gauga augc   ug a
   || |||||||||| |||||||||||||  ||||| ||||   || a
   aC ACUGUCUUCU AUUUCUCGuguuu  uuacu uacg   ac g
-cc  U          U             cc     c    gua  g 

Annotation confidence Not enough data

Genome context

chr7: 24257584-24257677 [+]

Mature mtr-miR156h-5p

• Accession: MIMAT0011099
• Description: Medicago truncatula mtr-miR156h-5p mature miRNA
• Sequence: 6 - UUGACAGAAGAUAGAGAGCAC - 26
• Evidence: experimental ; 454 [2], Northern [2], Illumina [3]

Mature mtr-miR156h-3p

• Accession: MIMAT0026729
• Description: Medicago truncatula mtr-miR156h-3p mature miRNA
• Sequence: 71 - GCUCUUUAUUCUUCUGUCAUC - 91
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None:


3. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105