Stem-loop mtr-MIR171d

Accession

MI0005619

Description

Medicago truncatula mtr-MIR171d precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

8 open access papers mention mtr-MIR171d
(53 sentences)

Sequence

aaugagauauuggccugguucacucagaccaagugauaaaccacuaagauacaguauuguacuugugugguuuuggguuUGAUUGAGCCGUGCCAAUAUCucacu
..((((((((((((.(((((((.(((((((.......(((((((((((.((((....)))))))).)))))))..))))))).))))))).))))))))))))..

Structure

aa            c       c       aagugau       -    a    g 
  ugagauauuggc ugguuca ucagacc       aaaccac uaag uaca u
  |||||||||||| ||||||| |||||||       ||||||| |||| ||||  
  acuCUAUAACCG GCCGAGU AGUuugg       uuuggug guuc augu a
uc            U       U       -----gu       u    -    u 

Annotation confidence Not enough data

Genome context

chr8: 20063684-20063788 [-]

Mature mtr-miR171d

• Accession: MIMAT0011105
• Description: Medicago truncatula mtr-miR171d mature miRNA
• Sequence: 80 - UGAUUGAGCCGUGCCAAUAUC - 100
• Evidence: experimental ; 454 [2], Northern [2]

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None: