miRBase entry: mtr-MIR396a

Stem-loop mtr-MIR396a


Accession
MI0005621
Description
Medicago truncatula mtr-MIR396a precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
4 open access papers mention mtr-MIR396a
(9 sentences)

Sequence

ugcuuUUCCACAGCUUUCUUGAACUUcuuucguaucuuaaaucuguuuucaagauuaaaaguccuagaaGCUCAAGAAAGCUGUGGGAGAaua
...(((((((((((((((((((.(((((.......(((.(((((.......)))))..)))....))))).)))))))))))))))))))...

Structure
ugc                   A     uucguau   -a     gu 
   uuUUCCACAGCUUUCUUGA CUUcu       cuu  aaucu  u
   ||||||||||||||||||| |||||       |||  |||||  u
   AGAGGGUGUCGAAAGAACU Gaaga       gaa  uuaga  u
aua                   C     ---uccu   aa     ac 


Annotation confidence Not enough data
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Genome context
chr4: 39789612-39789704 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR396a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR396a-5p

Accession MIMAT0011107
Description Medicago truncatula mtr-miR396a-5p mature miRNA
Sequence 6 - UUCCACAGCUUUCUUGAACUU - 26
Evidence experimental
454 [2], Illumina [4]

Mature mtr-miR396a-3p

Accession MIMAT0026456
Description Medicago truncatula mtr-miR396a-3p mature miRNA
Sequence 70 - GCUCAAGAAAGCUGUGGGAGA - 90
Evidence experimental
Illumina [3-4]

References

  1. PubMed ID: 19555436
    Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
    "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
    "New Phytol (2009) 184:85-98


  2. "Bonnet E"
    (2007) None:

  3. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553

  4. PubMed ID: 23572382
    microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
    "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
    "Planta (2013) 238:91-105