miRBase entry: mtr-MIR396b

Stem-loop mtr-MIR396b


Accession
MI0005622
Description
Medicago truncatula mtr-MIR396b precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
3 open access papers mention mtr-MIR396b
(8 sentences)

Sequence

uauucUUCCACAGCUUUCUUGAACUGcauccaaauugaguuccuuugcauugccauggccauuguuuugcgGUUCAAUAAAGCUGUGGGAAGaua
...((((((((((((((.((((((((((...((((......((...((...))...)).....)))))))))))))).)))))))).))))))..

Structure
uau      -        C          ucc    ugaguu  uuu  a 
   ucUUCC ACAGCUUU UUGAACUGca   aaau      cc   gc  
   |||||| |||||||| ||||||||||   ||||      ||   || u
   aGAAGG UGUCGAAA AACUUGgcgu   uuug      gg   cg  
-au      G        U          ---    -uuacc  uac  u 


Annotation confidence Not enough data
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Genome context
chr4: 39798253-39798347 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR396b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR396b-5p

Accession MIMAT0011108
Description Medicago truncatula mtr-miR396b-5p mature miRNA
Sequence 6 - UUCCACAGCUUUCUUGAACUG - 26
Evidence experimental
Illumina [2]

Mature mtr-miR396b-3p

Accession MIMAT0026732
Description Medicago truncatula mtr-miR396b-3p mature miRNA
Sequence 72 - GUUCAAUAAAGCUGUGGGAAG - 92
Evidence experimental
Illumina [2]

References


  1. "Bonnet E"
    (2007) None:

  2. PubMed ID: 23572382
    microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
    "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
    "Planta (2013) 238:91-105