miRBase entry: gra-MIR157b

Stem-loop gra-MIR157b


Accession
MI0005643
Description
Gossypium raimondii gra-MIR157b precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
1 open access papers mention gra-MIR157b
(5 sentences)

Sequence

guugUUGACAGAAGAUAGAGAGCACagaugaugguguugccuaugugcaugcaucccacuccuuugugcucucuaugcuucugucaucauc
..((.(((((((((((((((((((((((.(((((((((((......))).)))..))).)).)))))))))))))).))))))))).))..

Structure
gu  U         -              u  -   --   -   cu 
  ug UGACAGAAG AUAGAGAGCACaga ga ugg  ugu ugc  a
  || ||||||||| |||||||||||||| || |||  ||| |||   
  ac acugucuuc uaucucucguguuu cu acc  acg acg  u
cu  u         g              c  c   cu   u   ug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr8: 56322713-56322803 [-]

Database links

Mature gra-miR157b

Accession MIMAT0005811
Description Gossypium raimondii gra-miR157b mature miRNA
Sequence 5 - UUGACAGAAGAUAGAGAGCAC - 25
Evidence not_experimental

References

  1. PubMed ID: 18603441
    Identification of micro-RNAs in cotton
    "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
    "Plant Physiol Biochem (2008) 46:739-751