Stem-loop ghr-MIR390a

Accession

MI0005647

Description

Gossypium hirsutum ghr-MIR390a precursor miRNA

Gene family

MIPF0000101; MIR390

Literature search

14 open access papers mention ghr-MIR390a
(75 sentences)

Sequence

uggaagaaucuguuAAGCUCAGGAGGGAUAGCGCCauggaugauccaucuuucaagcuuucaugcauguauguuauuugauccucauauagcgcuauccauccugaguuucaucgguucuucuu
.(((((((((.((.((((((((((.(((((((((.(((((.((((.......((.((......)).))..........)))).)).))).))))))))).)))))))))).)).))))))))).

Structure

u         u  u          G         C   -  u    ---caucuuu  a  uu 
 ggaagaauc gu AAGCUCAGGA GGAUAGCGC aug ga gauc          ca gc  u
 ||||||||| || |||||||||| ||||||||| ||| || ||||          || ||   
 ucuucuugg ua uuugaguccu ccuaucgcg uau cu cuag          gu cg  c
u         c  c          a         a   a  c    uuuauuguau  a  ua 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR390a

• Accession: MIMAT0005815
• Description: Gossypium hirsutum ghr-miR390a mature miRNA
• Sequence: 15 - AAGCUCAGGAGGGAUAGCGCC - 35
• Evidence: not_experimental

References

1. PubMed ID: 18603441
   Identification of micro-RNAs in cotton
   "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
   "Plant Physiol Biochem (2008) 46:739-751