miRBase entry: ghr-MIR390b

Stem-loop ghr-MIR390b


Accession
MI0005648
Description
Gossypium hirsutum ghr-MIR390b precursor miRNA
Gene family
MIPF0000101; MIR390

Literature search
12 open access papers mention ghr-MIR390b
(70 sentences)

Sequence

guauggaagaaucuguuAAGCUCAGGAGGGAUAGCGCCauggaugauccaucuuucaagcuuucaugcauguauguuauuugauccucauauagcgcuauccauccugaguuucaucgguucuucuugcuug
(((.(((((((((.((.((((((((((.(((((((((.(((((.((((.......((.((......)).))..........)))).)).))).))))))))).)))))))))).)).))))))))))))...

Structure
---   u         u  u          G         C   -  u    ---caucuuu  a  uu 
   gua ggaagaauc gu AAGCUCAGGA GGAUAGCGC aug ga gauc          ca gc  u
   ||| ||||||||| || |||||||||| ||||||||| ||| || ||||          || ||   
   cgu ucuucuugg ua uuugaguccu ccuaucgcg uau cu cuag          gu cg  c
guu   -         c  c          a         a   a  c    uuuauuguau  a  ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ghr-miR390b

Accession MIMAT0005816
Description Gossypium hirsutum ghr-miR390b mature miRNA
Sequence 18 - AAGCUCAGGAGGGAUAGCGCC - 38
Evidence not_experimental

References

  1. PubMed ID: 18603441
    Identification of micro-RNAs in cotton
    "Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S"
    "Plant Physiol Biochem (2008) 46:739-751