Stem-loop hsa-mir-509-3

Accession

MI0005717

Symbol

HGNC: MIR509-3

Description

Homo sapiens hsa-mir-509-3 precursor miRNA mir-509

Gene
family

RF04216; mir-509

Literature search

32 open access papers mention hsa-mir-509-3
(226 sentences)

Sequence

81267 reads, 697 reads per million, 51 experiments

gugguacccUACUGCAGACGUGGCAAUCAUGuauaauuaaaaaUGAUUGGUACGUCUGUGGGUAGaguacugcau
(((((((.((((((((((((((.(((((((............))))))).))))))))).))))).)))))))..

Structure

--       c     -         G       Guaua 
  gugguac cUACU GCAGACGUG CAAUCAU     a
  ||||||| ||||| ||||||||| |||||||      
  cgucaug GAUGG UGUCUGCAU GUUAGUa     u
ua       a     G         G       aaaau 

Annotation confidence Medium

Genome context

chrX: 147259652-147259726 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from hsa-mir-509-3

Mature hsa-miR-509-3p

• Accession: MIMAT0002881
• Description: Homo sapiens hsa-miR-509-3p mature miRNA
• Sequence: 44 - UGAUUGGUACGUCUGUGGGUAG - 65
• Evidence: experimental ; array-cloned [1], cloned [2-3]

Mature hsa-miR-509-3-5p

• Accession: MIMAT0004975
• Description: Homo sapiens hsa-miR-509-3-5p mature miRNA
• Sequence: 10 - UACUGCAGACGUGGCAAUCAUG - 31
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 15965474
   Identification of hundreds of conserved and nonconserved human microRNAs
   "Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z"
   "Nat Genet (2005) 37:766-770


3. PubMed ID: 17573847
   Analysis of gene expression in normal and neoplastic human testis: new roles of RNA
   "Novotny GW, Nielsen JE, Sonne SB, Skakkebaek NE, Rajpert-De Meyts E, Leffers H"
   "Int J Androl (2007) 30:316-326