miRBase entry: ame-mir-31a

Stem-loop ame-mir-31a


Accession
MI0005737
Description
Apis mellifera ame-mir-31a precursor miRNA
Gene family
MIPF0000064; mir-31

Literature search
2 open access papers mention ame-mir-31a
(2 sentences)

Sequence

aucacgauucuaacugggcgccucgaaGGCAAGAUGUCGGCAUAGCUGAugcgauuuuaaaauucggcugugucacauccagccaaccgaacgcucagac
.............(((((((..(((..(((..(((((.(((((((((((..............))))))))))))))))..)))...))).)))))))..

Structure
aucacgauucuaa       cc   -aa   AA     C           ugcgau 
             cugggcg  ucg   GGC  GAUGU GGCAUAGCUGA      u
             |||||||  |||   |||  ||||| |||||||||||       
             gacucgc  agc   ccg  cuaca cugugucggcu      u
-----------ca       -a   caa   ac     -           uaaaau 


Annotation confidence Not enough data
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Genome context
CM000061.5: 6341616-6341715 [-]

Database links

Mature ame-miR-31a-5p

Accession MIMAT0004428
Description Apis mellifera ame-miR-31a-5p mature miRNA
Sequence 28 - GGCAAGAUGUCGGCAUAGCUGA - 49
Evidence experimental
array [1], Illumina [2-3]

References

  1. PubMed ID: 17543122
    Computational and transcriptional evidence for microRNAs in the honey bee genome
    Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG
    Genome Biol (2007) 8:R97

  2. PubMed ID: 22409512
    Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
    "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
    "Genes Brain Behav (2012) 11:660-670

  3. PubMed ID: 26853694
    MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
    "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
    "Insect Mol Biol (2016) 25:216-226