miRBase entry: pta-MIR159c

Stem-loop pta-MIR159c


Accession
MI0005780
Description
Pinus taeda pta-MIR159c precursor miRNA
Gene family
MIPF0000010; MIR159


Sequence

gaugugugaaugaugcgggagcugauuuuguccaggaaaugucuuuucCUUGGAUUGAAGGGAGCUCCCuuauguagcauacauu
((((((((....(((.(((((((..(((.((((((((((.....))))).))))).)))...))))))).)))....))))))))

Structure
        aaug   c       -ga   u     -     u 
gaugugug    aug gggagcu   uuu gucca ggaaa g
||||||||    ||| |||||||   ||| ||||| ||||| u
uuacauac    uau CCCUCGA   AAG UAGGU Ccuuu c
        gaug   u       GGG   U     U     u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pta-miR159c

Accession MIMAT0004992
Description Pinus taeda pta-miR159c mature miRNA
Sequence 49 - CUUGGAUUGAAGGGAGCUCCC - 69
Evidence not_experimental

References

  1. PubMed ID: 17635765
    MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
    "Lu S, Sun YH, Amerson H, Chiang VL"
    "Plant J (2007) 51:1077-1098