Stem-loop pta-MIR166c

Accession

MI0005784

Description

Pinus taeda pta-MIR166c precursor miRNA

Gene family

MIPF0000004; MIR166

Sequence

accaaucgaauCCGGACCAGGCUUCAUCCCAGgcaucuggacccaaucgacagcagcuccuuuagccuuugaaaggaacucugucaaggucuccucugcuauagacaggaguccagcggggcuagcaucucuugggggaugcugagguguuggauuauguuggu
((((((..((((((((((.(((.((.(((((((.((((((.(((....(((((.((.((((((........)))))).)))))))..((.((((((((...))))..)))).))....))))))).))..))))))))).)))..))).)))))))..))))))

Structure

      cg       -   -A   U  A       -c  -    a   -----------------------------aauc     c  c      agc 
accaau  aauCCGG ACC  GGC UC UCCCAGg  au cugg ccc                                 gacag ag uccuuu   c
||||||  ||||||| |||  ||| || |||||||  || |||| |||                                 ||||| || ||||||    
ugguug  uuagguu ugg  ucg ag gggguuc  ua gauc ggg                                 cuguc uc aggaaa   u
      ua       g   ag   u  -       uc  c    -   gcgaccugaggacagauaucgucuccucuggaa     -  a      guu 

Annotation confidence Not enough data

Genome context

Unknown

Mature pta-miR166c

• Accession: MIMAT0004995
• Description: Pinus taeda pta-miR166c mature miRNA
• Sequence: 12 - CCGGACCAGGCUUCAUCCCAG - 32
• Evidence: not_experimental

References

1. PubMed ID: 17635765
   MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
   "Lu S, Sun YH, Amerson H, Chiang VL"
   "Plant J (2007) 51:1077-1098