Stem-loop pta-MIR946a

Accession

MI0005794

Description

Pinus taeda pta-MIR946a precursor miRNA

Gene family

MIPF0000427; MIR946

Sequence

cagaguguauggaUGUGGAUAGAGAAGGGUUAGUaaacgguagaaaacccauuuauuguaugucauuggcuguucgagauuaagcagcuguaauucgauggccauacucauuaaauggguuggcuguuugcucuguacCAGCCCUUCUCCUAUCCACAAuuguacuaguuug
((((.(((((((.((((((((((((((((((((((((((((....((((((((((..(((((((((((((((((........)))))).......)))))).)))))....)))))))))).)))))))))).......))))))))).))))))))).)))))).).))))

Structure

    g -      a         -         -------          agaa          --uu     -      -------      cga 
caga u guaugg UGUGGAUAG AGAAGGGUU       AGUaaacggu    aacccauuua    guaug ucauug       gcuguu   g
|||| | |||||| ||||||||| |||||||||       ||||||||||    ||||||||||    ||||| ||||||       ||||||    
guuu a cauguu ACACCUAUC UCUUCCCGA       ucguuugucg    uuggguaaau    cauac gguagc       cgacga   a
    g u      A         C         Ccauguc          ---g          uacu     c      uuaaugu      auu 

Annotation confidence Not enough data

Comments

The cloned miR946 sequences in [1] has an additional 3' A residue, which is incompatible with the genomic sequence and hairpin shown here.

Genome context

Unknown

Mature pta-miR946a-5p

• Accession: MIMAT0006791
• Description: Pinus taeda pta-miR946a-5p mature miRNA
• Sequence: 14 - UGUGGAUAGAGAAGGGUUAGU - 34
• Evidence: experimental ; 454 [2]

Mature pta-miR946a-3p

• Accession: MIMAT0005005
• Description: Pinus taeda pta-miR946a-3p mature miRNA
• Sequence: 139 - CAGCCCUUCUCCUAUCCACAA - 159
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17635765
   MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
   "Lu S, Sun YH, Amerson H, Chiang VL"
   "Plant J (2007) 51:1077-1098


2. PubMed ID: 18323537
   Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
   "Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ"
   "Genome Res (2008) 18:571-584