Stem-loop pta-MIR946b

Accession

MI0005795

Description

Pinus taeda pta-MIR946b precursor miRNA

Gene family

MIPF0000427; MIR946

Sequence

cagaguguauggauguggauauggaaggguuaguaaacaguacaaaacccauuuaauagagauuccaucggagcaucauuguuggcuguuagaucaagcaacuguauuuugauggccacacucauugaauggguugcuuguuuugcuuuuaaccagcccuuuuucuauccaacugccuguauuuugauggccaugcucauuaaauggguuaccuguuagcuauucacCAGCCCUUCUCCUAUCCACAAcuguacuaguuug
((((.(((((((.((((((((.((((((((((((.(((((.....((((((((((((.(((...(((((((((((.....(((((((((((((.(((((((((....((((((((......))))))))..))))))))).......))))).)))))............)))....)))..)))))))).....)))))))))))))))..))))).)))).......))))))))..)))))))).)))))).).))))

Structure

    g -      a        -u        -------    a     uacaa            a   --auu        --   ucauu   ------------     -     ------u         guau        cc 
caga u guaugg uguggaua  ggaagggu       uagu aacag     aacccauuuaau gag     ccaucgga  gca     guu            ggcug uuaga       caagcaacu    uuugaugg  a
|||| | |||||| ||||||||  ||||||||       |||| |||||     |||||||||||| |||     ||||||||  |||     |||            ||||| |||||       |||||||||    ||||||||   
guuu a cauguc ACACCUAU  UCUUCCCG       aucg uuguc     uuggguaaauua cuc     gguaguuu  ugu     caa            ccgac aauuu       guucguugg    aaguuacu  c
    g u      A        CC        ACcacuu    a     ---ca            -   guacc        ua   -ccgu   ccuaucuuuuuc     c     ucguuuu         --gu        ca 

Annotation confidence Not enough data

Comments

The cloned miR946 sequences in [1] has an additional 3' A residue, which is incompatible with the genomic sequence and hairpin shown here.

Genome context

Unknown

Mature pta-miR946b

• Accession: MIMAT0005006
• Description: Pinus taeda pta-miR946b mature miRNA
• Sequence: 228 - CAGCCCUUCUCCUAUCCACAA - 248
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17635765
   MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
   "Lu S, Sun YH, Amerson H, Chiang VL"
   "Plant J (2007) 51:1077-1098