miRBase entry: pta-MIR952b

Stem-loop pta-MIR952b


Accession
MI0005803
Description
Pinus taeda pta-MIR952b precursor miRNA
Gene family
MIPF0000426; MIR952


Sequence

gaacuacucgcgcauugAACUGAGAAUGCCAUUGGUGgaguaaguacgucaagggacgaaacagaauuaauuuugauuaacauuuuauuaaccuucaacucuaccuuggcuuauggaaguucgugaaggucacagggcaaggacuagucugcugguugcugccacagucaauugggacucucccaaguuauucucagcugcagcauuccgaaguuauucaauguugcagccgagaauauuauggggacaguccauuggucacaacagccagccgauuacaccuuguaugagugccccaacuggugugaguuucaugaacugccagaagccaaaacagaguugcaacgcuaauaaaacauuaugcaaaauuaauuccauuuuguugguugacauacuucauccgcuaauagcacgcuuaguucaauuugcuaaugguuc
((((((...(((.(((((((((((..(((.(((((((((..(((((.(((((..(((((((..((((((((((((..(((..((((((((.(.(((((((((...(((((((.(((.(((((((((((.((((...((((((..(((((.((((((((.((..((...((((..(((((.((((....(((((((.(((((((((((..(((....)))))))))))))).))))))).....)))).)))))))))))..)).)))))))).)))))..))))))((.(((......))).)))))).))))))))))).))).)))))))...))))))).)).).))))))))..)))..))))))))))))..)))))))..))))).)))))..))))))))).)))..))))))))))).)))...))))))

Structure
      cuc   c           AA   C         gu     c     gg       ca            au   ca        a c  -       acc       a   a           g    ---------------agg      ac     u        c  cc  agu    ug     c    -aagu       a           cc   g 
gaacua   gcg auugAACUGAG  UGC AUUGGUGga  aagua gucaa  gacgaaa  gaauuaauuuug  uaa  uuuuauua c uu caacucu   uuggcuu ugg aguucgugaag ucac                  gcaagg  uaguc gcugguug ug  ac   caau  ggacu uccc     uauucuc gcugcagcauu  gaa u
||||||   ||| |||||||||||  ||| |||||||||  ||||| |||||  |||||||  ||||||||||||  |||  |||||||| | || |||||||   ||||||| ||| ||||||||||| ||||                  ||||||  ||||| |||||||| ||  ||   ||||  ||||| ||||     ||||||| |||||||||||  |||  
cuuggu   cgu uaacuugauuc  acg uaaucgccu  uucau caguu  uuguuuu  cuuaauuaaaac  auu  aaaauaau g aa guugaga   aaccgaa acc ucaaguacuuu agug                  uguucc  auuag cgaccgac ac  ug   guua  ccuga aggg     auaagag cgacguuguaa  cuu u
      aau   u           gc   a         ac     a     gg       ac            gu   ac        c c  c       caa       g   g           g    uggucaaccccgugagua      ac     c        a  ac  ---    --     c    guauu       c           --   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pta-miR952b

Accession MIMAT0005014
Description Pinus taeda pta-miR952b mature miRNA
Sequence 18 - AACUGAGAAUGCCAUUGGUG - 37
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17635765
    MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
    "Lu S, Sun YH, Amerson H, Chiang VL"
    "Plant J (2007) 51:1077-1098