miRBase entry: dme-mir-987

Stem-loop dme-mir-987


Accession
MI0005846
Description
Drosophila melanogaster dme-mir-987 precursor miRNA
Gene family
MIPF0000859; mir-987

Literature search
2 open access papers mention dme-mir-987
(8 sentences)

Sequence

190893 reads, 1638 reads per million, 44 experiments
uguuggacuguguuUAAAGUAAAUAGUCUGGAUUGAUGaaaguugcauucgagaauucAUCAACAGGCAUUUACUUCAacugcaguuugaacaa
((((((((((((((..((((((((.(((((..((((((((..(((....)))...))))))))))))))))))))).))).))))))).)))).

Structure
-    -       -   UA        A     GA        -ag   c 
 uguu ggacugu guu  AAGUAAAU GUCUG  UUGAUGaa   uug a
 |||| ||||||| |||  |||||||| |||||  ||||||||   |||  
 acaa uuugacg caA  UUCAUUUA CGGAC  AACUAcuu   agc u
a    g       u   -C        -     --        aag   u 


Annotation confidence Not enough data
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Genome context
chr2R: 9313023-9313116 [-]

Database links

Mature dme-miR-987-5p

Accession MIMAT0005504
Description Drosophila melanogaster dme-miR-987-5p mature miRNA
Sequence 15 - UAAAGUAAAUAGUCUGGAUUGAUG - 38
Evidence experimental
454 [1-2], Illumina [2]
Database links
Predicted targets

Mature dme-miR-987-3p

Accession MIMAT0020885
Description Drosophila melanogaster dme-miR-987-3p mature miRNA
Sequence 59 - AUCAACAGGCAUUUACUUCA - 78
Evidence not_experimental
Database links

References

  1. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  2. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879