miRBase entry: dme-mir-996

Stem-loop dme-mir-996


Accession
MI0005857
Description
Drosophila melanogaster dme-mir-996 precursor miRNA
Gene family
MIPF0000449; mir-996

Literature search
4 open access papers mention dme-mir-996
(121 sentences)

Sequence

676732 reads, 19925 reads per million, 49 experiments
ucugacucuauuuugucgGCGAACAUGGAUCUAGUGCACGgugguucaugauuaaguucgUGACUAGAUUUCAUGCUCGUCUauuaaguugggucag
.(((((((.((((.((.(((((.((((((((((((.((((((((((...)))))...))))))))))).)))))).))))).)).)))).)))))))

Structure
u       u    u  c     A      -      G     ---     c 
 cugacuc auuu gu gGCGA CAUGGA UCUAGU CACGg   ugguu  
 ||||||| |||| || ||||| |||||| |||||| |||||   ||||| a
 gacuggg ugaa ua CUGCU GUACUU AGAUCA GUgcu   auuag  
-       u    u  U     C      U      -     uga     u 


Annotation confidence Not enough data
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Genome context
chr3R: 29217184-29217280 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dme-mir-996
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-996-3p

Accession MIMAT0005515
Description Drosophila melanogaster dme-miR-996-3p mature miRNA
Sequence 61 - UGACUAGAUUUCAUGCUCGUCU - 82
Evidence experimental
454 [1-2], Illumina [2]
Database links
Predicted targets

Mature dme-miR-996-5p

Accession MIMAT0020895
Description Drosophila melanogaster dme-miR-996-5p mature miRNA
Sequence 19 - GCGAACAUGGAUCUAGUGCACG - 40
Evidence not_experimental
Database links

References

  1. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  2. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879