Stem-loop sequence dme-mir-997

Accession

MI0005859 (change log)

Description

Drosophila melanogaster miR-997 stem-loop

Literature search

2 open access papers mention dme-mir-997
(2 sentences)

Stem-loop

   uuaug     --ucu       aau        cc    c     g         c  ca          ag  --       a   a      c aaa     u   au 
5'      gaucc     uucaaug   uuaguaug  caaa ucgaa gaguuucac uc  uaagagcgac  uc  cuggaga guu ucagag c   aaaau cau  g
        |||||     |||||||   ||||||||  |||| ||||| ||||||||| ||  ||||||||||  ||  ||||||| ||| |||||| |   ||||| |||   
3'      cuagg     agguuac   aaucauac  guuu agcuu cucaaagug ag  auuuuuguug  ag  gacuucu caa agucuc g   uuuua gua  a
   -acgg     uucgu       agc        ua    u     a         a  cg          -a  ac       g   a      u -cc     c   gu 

Deep sequencing

621 reads, 117 reads per million, 18 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Release_6; GCA_000001215.4): chr3R: 19326954-19327168 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00007BA026_7227
• miRBase Tracker:MI0005859

Mature sequence dme-miR-997-5p

• Accession: MIMAT0005517
• Previous IDs: dme-miR-997
• Sequence: 32 - cccaaacucgaaggaguuuca - 52
• Deep sequencing: 589 reads, 13 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS000048A43E_7227
• Predicted targets:
  • TargetScanFly:dme-miR-997
  • microrna.org:dme-miR-997-5p

Mature sequence dme-miR-997-3p

• Accession: MIMAT0020897
• Sequence: 165 - aaacucauucgauuuugauca - 185
• Deep sequencing: 16 reads, 5 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00004ED8A3_7227

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).