miRBase entry: ppt-MIR160e

Stem-loop ppt-MIR160e


Accession
MI0005901
Description
Physcomitrella patens ppt-MIR160e precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
3 open access papers mention ppt-MIR160e
(9 sentences)

Sequence

cugcagaaaucaaugggggaaacuggcacUGCCUGGCUCCCUGUAUGCCAcuugcgaauuuuggcaaaacuuguggcaggguacguagcugccauacagggagucagacagaccuugcaucuucccggauucucauga
.((.((((.((...((((((..(.((..(((.(((((((((((((((.((.(((((.((((((.((.......)).)))))).))))).)).))))))))))))))).)))..)).)..))))))..))))))))...

Structure
--c  c    a  aau      aa u  ca   C               C  c     a      g  aa 
   ug agaa uc   ggggga  c gg  cUG CUGGCUCCCUGUAUG CA uugcg auuuug ca  a
   || |||| ||   ||||||  | ||  ||| ||||||||||||||| || ||||| |||||| ||  c
   ac ucuu ag   ccuucu  g uc  gac gacugagggacauac gu gaugc ugggac gu  u
agu  -    -  -gc      ac u  ca   a               c  c     a      g  gu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr22: 7580013-7580150 [+]

Database links

Mature ppt-miR160e

Accession MIMAT0005034
Description Physcomitrella patens ppt-miR160e mature miRNA
Sequence 30 - UGCCUGGCUCCCUGUAUGCCA - 50
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769