miRBase entry: ppt-MIR160h

Stem-loop ppt-MIR160h


Accession
MI0005904
Description
Physcomitrella patens ppt-MIR160h precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
3 open access papers mention ppt-MIR160h
(9 sentences)

Sequence

uuaguucagcauggggagauaucggaucCGCCUGGCUCCUUGUAUGCCAacugagaagcuuguugaacauuuugccaggauucauagcuggcacucagggagucaagcaggccauuggucuugccaugacuuucac
.......(((((((.(((((...((.((.((.((((((((((..(((((.(((.(((.((((.((((...)))).)))).))).))).)))))..)))))))))).)).))))....))))).))))).)).....

Structure
uuaguuc  -     g     -auc  a  C  C          UA     a   a   g    u    c 
       ag caugg gagau    gg uc GC UGGCUCCUUG  UGCCA cug gaa cuug ugaa  
       || ||||| |||||    || || || ||||||||||  ||||| ||| ||| |||| |||| a
       uc guacc uucug    cc gg cg acugagggac  acggu gau cuu ggac guuu  
--cacuu  a     g     guua  -  a  a          uc     c   a   a    c    u 


Annotation confidence Not enough data
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Genome context
Chr21: 10138798-10138933 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppt-MIR160h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppt-miR160h

Accession MIMAT0005037
Description Physcomitrella patens ppt-miR160h mature miRNA
Sequence 29 - CGCCUGGCUCCUUGUAUGCCA - 49
Evidence experimental
454 [1]

References

  1. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769