miRBase entry: rno-mir-466b-1

Stem-loop rno-mir-466b-1


Accession
MI0006112
Description
Rattus norvegicus rno-mir-466b-1 precursor miRNA
Gene family
MIPF0000316; mir-467

Literature search
18 open access papers mention rno-mir-466b-1
(121 sentences)

Sequence

861 reads, 29 reads per million, 250 experiments
cauguguauaUAUGUGUGUGUGUAUGUCCAUGuguguauaugaauAUACAUACACACACACAUACACacacgugcaagcacacaca
..(((((...(((((((((((((.(((...((((((((((....))))))))))...))).)))))))))))))...)))))....

Structure
--ca     aua             A   CCA          u 
    ugugu   UAUGUGUGUGUGU UGU   UGuguguaua g
    |||||   ||||||||||||| |||   ||||||||||  
    acacg   gugcacaCACAUA ACA   ACAUACAUAu a
acac     aac             C   CAC          a 


Annotation confidence Not enough data
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Genome context
chr17: 71812077-71812162 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-466b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-466b-3p

Accession MIMAT0017285
Description Rattus norvegicus rno-miR-466b-3p mature miRNA
Sequence 46 - AUACAUACACACACACAUACAC - 67
Evidence experimental
SOLiD [2]

Mature rno-miR-466b-5p

Accession MIMAT0005278
Description Rattus norvegicus rno-miR-466b-5p mature miRNA
Sequence 11 - UAUGUGUGUGUGUAUGUCCAUG - 32
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249