Stem-loop rno-mir-466b-1

Accession

MI0006112

Description

Rattus norvegicus rno-mir-466b-1 precursor miRNA

Literature search

18 open access papers mention rno-mir-466b-1
(121 sentences)

Sequence

855 reads, 2 reads per million, 249 experiments

cauguguauaUAUGUGUGUGUGUAUGUCCAUGuguguauaugaauAUACAUACACACACACAUACACacacgugcaagcacacaca
..(((((...(((((((((((((.(((...((((((((((....))))))))))...))).)))))))))))))...)))))....

Structure

--ca     aua             A   CCA          u 
    ugugu   UAUGUGUGUGUGU UGU   UGuguguaua g
    |||||   ||||||||||||| |||   ||||||||||  
    acacg   gugcacaCACAUA ACA   ACAUACAUAu a
acac     aac             C   CAC          a 

Annotation confidence Not enough data

Genome context

chr17: 71812077-71812162 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-466b-1

Mature rno-miR-466b-3p

• Accession: MIMAT0017285
• Description: Rattus norvegicus rno-miR-466b-3p mature miRNA
• Sequence: 46 - AUACAUACACACACACAUACAC - 67
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-466b-5p

• Accession: MIMAT0005278
• Description: Rattus norvegicus rno-miR-466b-5p mature miRNA
• Sequence: 11 - UAUGUGUGUGUGUAUGUCCAUG - 32
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249