miRBase entry: rno-mir-466b-2

Stem-loop rno-mir-466b-2


Accession
MI0006113
Description
Rattus norvegicus rno-mir-466b-2 precursor miRNA
Gene family
MIPF0000316; mir-467

Literature search
18 open access papers mention rno-mir-466b-2
(118 sentences)

Sequence

996 reads, 31 reads per million, 266 experiments
cauguguguaUAUGUGUGUGUGUAUGUCCAUGuguguauaugauuauacAUAUACAUACACACAUACACAuauacgcaagca
..(((((((((.(((((((((((((((..(((((((((......)))))))))))))))))))))))).)))))))))....

Structure
--ca         A               CC         ua 
    uguguguaU UGUGUGUGUGUAUGU  AUGugugua  u
    ||||||||| |||||||||||||||  |||||||||   
    acgcauauA ACAUACACACAUACA  UAUAcauau  g
acga         C               --         ua 


Annotation confidence Not enough data
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Genome context
chr17: 71809047-71809128 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-466b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-466b-5p

Accession MIMAT0005278
Description Rattus norvegicus rno-miR-466b-5p mature miRNA
Sequence 11 - UAUGUGUGUGUGUAUGUCCAUG - 32
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-466b-2-3p

Accession MIMAT0017286
Description Rattus norvegicus rno-miR-466b-2-3p mature miRNA
Sequence 50 - AUAUACAUACACACAUACACA - 70
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249