miRBase entry: rno-mir-466c

Stem-loop rno-mir-466c


Accession
MI0006114
Description
Rattus norvegicus rno-mir-466c precursor miRNA
Gene family
MIPF0000316; mir-467

Literature search
14 open access papers mention rno-mir-466c
(92 sentences)

Sequence

1603 reads, 22 reads per million, 305 experiments
cauguguguaUGUGAUGUGUGUAUGUACAUGuguguauaugaagaaacaUAUACAUGCACACAUACACACacacuggca
......(((..(((.(((((((((((...((((((((((((......)))))))))))).))))))))))))))..)))

Structure
caugug   aU   A           ACA            aa 
      ugu  GUG UGUGUGUAUGU   UGuguguauaug  g
      |||  ||| |||||||||||   ||||||||||||   
      acg  cac aCACACAUACA   ACGUACAUAUac  a
------   gu   -           --C            aa 


Annotation confidence High
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Genome context
chr17: 72060077-72060155 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-466c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-466c-5p

Accession MIMAT0005279
Description Rattus norvegicus rno-miR-466c-5p mature miRNA
Sequence 11 - UGUGAUGUGUGUAUGUACAUG - 31
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-466c-3p

Accession MIMAT0017287
Description Rattus norvegicus rno-miR-466c-3p mature miRNA
Sequence 50 - UAUACAUGCACACAUACACAC - 70
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249