Stem-loop rno-mir-871

Accession

MI0006116

Description

Rattus norvegicus rno-mir-871 precursor miRNA

Gene family

MIPF0000386; mir-743

Literature search

1 open access papers mention rno-mir-871
(3 sentences)

Sequence

12204 reads, 890 reads per million, 114 experiments

ugcagugcccUAUUCAGAUUGGUGCCGGUCACAUgaaguacauaUGACUGGCACCAUACUGGAUAAuguaaugcuca
.(((.(((..(((((((..((((((((((((.(((.....))).))))))))))))..)))))))..))).)))...

Structure

--u   g   cc       AU            C   a 
   gca ugc  UAUUCAG  UGGUGCCGGUCA AUg a
   ||| |||  |||||||  |||||||||||| ||| g
   cgu aug  AUAGGUC  ACCACGGUCAGU uac u
acu   a   uA       AU            a   a 

Annotation confidence High

Genome context

chrX: 151287787-151287863 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from rno-mir-871

Mature rno-miR-871-5p

• Accession: MIMAT0005281
• Description: Rattus norvegicus rno-miR-871-5p mature miRNA
• Sequence: 11 - UAUUCAGAUUGGUGCCGGUCACAU - 34
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-871-3p

• Accession: MIMAT0017289
• Description: Rattus norvegicus rno-miR-871-3p mature miRNA
• Sequence: 45 - UGACUGGCACCAUACUGGAUAA - 66
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249