miRBase entry: rno-mir-874

Stem-loop rno-mir-874


Accession
MI0006118
Description
Rattus norvegicus rno-mir-874 precursor miRNA
Gene family
MIPF0000401; mir-874

Literature search
11 open access papers mention rno-mir-874
(20 sentences)

Sequence

19471 reads, 48 reads per million, 425 experiments
uuagcccugCGGCCCCACGCACCAGGGUAAgagagacucgcuucCUGCCCUGGCCCGAGGGACCGAcuggcugggc
((((((...(((.(((.((..((((((((.(((........))).))))))))..)).))).)))...))))))..

Structure
--      cug   C   A  CA        A   aga 
  uuagcc   CGG CCC CG  CCAGGGUA gag   c
  ||||||   ||| ||| ||  |||||||| |||    
  ggucgg   GCC GGG GC  GGUCCCGU cuu   u
cg      ucA   A   A  CC        C   cgc 


Annotation confidence High
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Genome context
chr17: 7025014-7025089 [+]

Database links

Mature rno-miR-874-5p

Accession MIMAT0017290
Description Rattus norvegicus rno-miR-874-5p mature miRNA
Sequence 10 - CGGCCCCACGCACCAGGGUAA - 30
Evidence experimental
SOLiD [2]

Mature rno-miR-874-3p

Accession MIMAT0005284
Description Rattus norvegicus rno-miR-874-3p mature miRNA
Sequence 45 - CUGCCCUGGCCCGAGGGACCGA - 66
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249