Stem-loop rno-mir-877

Accession

MI0006119

Description

Rattus norvegicus rno-mir-877 precursor miRNA

Gene family

MIPF0000392; mir-877

Literature search

5 open access papers mention rno-mir-877
(7 sentences)

Sequence

6287 reads, 43 reads per million, 395 experiments

GUAGAGGAGAUGGCGCAGGGgacacaagguaggccuugcgggucugugggcccuuggacauguguccucuucucccuccucccag
...((((((..((.(.((((((((((..((...((....(((((....)))))..)))).)))))))))).).))))))))....

Structure

-GUA      AU  C C          ag  agg  uugc     u 
    GAGGAG  GG G AGGGgacaca  gu   cc    ggguc g
    ||||||  || | ||||||||||  ||   ||    |||||  
    cuccuc  cc c ucuccugugu  ca   gg    cccgg u
gacc      --  u u          -a  ---  --uu     g 

Annotation confidence Low

Genome context

chr20: 3318872-3318956 [+]

Mature rno-miR-877

• Accession: MIMAT0005285
• Description: Rattus norvegicus rno-miR-877 mature miRNA
• Sequence: 1 - GUAGAGGAGAUGGCGCAGGG - 20
• Evidence: experimental ; cloned [1-2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 17964270
   Mammalian mirtron genes
   "Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC"
   "Mol Cell (2007) 28:328-336