Stem-loop rno-mir-881

Accession

MI0006123

Description

Rattus norvegicus rno-mir-881 precursor miRNA

Gene family

MIPF0000429; mir-881

Literature search

2 open access papers mention rno-mir-881
(3 sentences)

Sequence

21188 reads, 1583 reads per million, 112 experiments

ugcaguacaaUAUUCAGAGUGGUAGCAGUcacuuuauucuaaagUAACUGUGGCAUUUCUGAAUAGaguaauguuca
.(((.(((..(((((((((..((.(((((.((((((...)))))).))))).))..)))))))))..))).)))...

Structure

--u   g   aa         UG  A     c      u 
   gca uac  UAUUCAGAG  GU GCAGU acuuua  
   ||| |||  |||||||||  || ||||| |||||| u
   ugu aug  AUAAGUCUU  CG UGUCA Ugaaau  
acu   a   aG         UA  G     A      c 

Annotation confidence High

Genome context

chrX: 151283910-151283986 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from rno-mir-881

Mature rno-miR-881-5p

• Accession: MIMAT0017293
• Description: Rattus norvegicus rno-miR-881-5p mature miRNA
• Sequence: 11 - UAUUCAGAGUGGUAGCAGU - 29
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-881-3p

• Accession: MIMAT0005289
• Description: Rattus norvegicus rno-miR-881-3p mature miRNA
• Sequence: 45 - UAACUGUGGCAUUUCUGAAUAG - 66
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249