Stem-loop sequence mmu-mir-582

Accession

MI0006127 (change log)

Symbol

MGI:Mir582

Description

Mus musculus miR-582 stem-loop

Gene family

MIPF0000417; mir-582

Literature search

9 open access papers mention mmu-mir-582
(38 sentences)

Stem-loop

   -----         aua            ca     uaaucu 
5'      acucuuugg   caguuguucaac  guuac      a
        |||||||||   ||||||||||||  |||||       
3'      ugggaaacc   gucaacaaguug  caaug      a
   aaacg         caa            uc     uuaauc 

Deep sequencing

15731 reads, 15.5 reads per million, 84 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr13: 109324744-109324824 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000080696 ; Pde4d-006; intron 1

  OTTMUST00000080694 ; Pde4d-004; intron 1

  OTTMUST00000080693 ; Pde4d-003; intron 1

  OTTMUST00000080695 ; Pde4d-005; intron 1

  OTTMUST00000079296 ; Pde4d-001; intron 3

  ENSMUST00000129374 ; Pde4d-006; intron 1

  ENSMUST00000138938 ; Pde4d-004; intron 1

  ENSMUST00000120671 ; Pde4d-003; intron 1

  ENSMUST00000153234 ; Pde4d-005; intron 1

  ENSMUST00000177907 ; Pde4d-201; intron 2

  ENSMUST00000122041 ; Pde4d-001; intron 3

Database links

• EntrezGene:Mir582
• MGI:Mir582
• RNAcentral:URS000075D898_10090
• miRBase Tracker:MI0006127

Mature sequence mmu-miR-582-5p

• Accession: MIMAT0005291
• Sequence: 10 - auacaguuguucaaccaguuac - 31
• Deep sequencing: 5429 reads, 75 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00000363CD_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-582-5p
  • miRDB:mmu-miR-582-5p
  • microrna.org:mmu-miR-582-5p

Mature sequence mmu-miR-582-3p

• Accession: MIMAT0005292
• Sequence: 47 - uaaccuguugaacaacugaac - 67
• Deep sequencing: 10302 reads, 69 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS0000478976_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-582-3p
  • miRDB:mmu-miR-582-3p
  • microrna.org:mmu-miR-582-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).