miRBase entry: rno-mir-17-2

Stem-loop rno-mir-17-2


Accession
MI0006131
Description
Rattus norvegicus rno-mir-17-2 precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
72 open access papers mention rno-mir-17-2
(575 sentences)

Sequence

64204 reads, 89 reads per million, 492 experiments
uuggccauguCAAAGUGCUUACAGUGCAGGUAGcuucuugagaucuACUGCACUGCAAGCACUUCUUACauuaccaug
.(((..((((..((((((((.((((((((.(((..((....)).))))))))))).))))))))...))))..)))..

Structure
-u   cc    -CA        A        G   cu  u 
  ugg  augu   AAGUGCUU CAGUGCAG UAG  uc u
  |||  ||||   |||||||| |||||||| |||  ||  
  acc  uaCA   UUCACGAA GUCACGUC Auc  ag g
gu   au    UUC        C        -   -u  a 


Annotation confidence High
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Genome context
chrX: 140117891-140117968 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from rno-mir-17-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-17-5p

Accession MIMAT0000786
Description Rattus norvegicus rno-miR-17-5p mature miRNA
Sequence 11 - CAAAGUGCUUACAGUGCAGGUAG - 33
Evidence experimental
cloned [1-2], SOLiD [3]

Mature rno-miR-17-2-3p

Accession MIMAT0017295
Description Rattus norvegicus rno-miR-17-2-3p mature miRNA
Sequence 47 - ACUGCACUGCAAGCACUUCUUAC - 69
Evidence experimental
SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  3. PubMed ID: 15345052
    Microarray analysis of microRNA expression in the developing mammalian brain
    Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
    Genome Biol (2004) 5:R68