miRBase entry: rno-mir-182

Stem-loop rno-mir-182


Accession
MI0006133
Description
Rattus norvegicus rno-mir-182 precursor miRNA
Gene family
MIPF0000116; mir-182

Literature search
34 open access papers mention rno-mir-182
(302 sentences)

Sequence

3531269 reads, 5002 reads per million, 508 experiments
acgcgggucuagcugccggaggccucccaccguuUUUGGCAAUGGUAGAACUCACACCGgua
..(.(((((((.(((((((((((........))))))))))..).))).)))).).......

Structure
-----ac c    -   g --          cuc 
       g gggu cua c  ugccggaggc   c
       | |||| ||| |  ||||||||||    
       C CUCA GAU G  ACGGUUUuug   c
augGCCA A    A   G UA          cca 


Annotation confidence Not enough data
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Genome context
chr4: 57459773-57459834 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from rno-mir-182
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-182

Accession MIMAT0005300
Description Rattus norvegicus rno-miR-182 mature miRNA
Sequence 35 - UUUGGCAAUGGUAGAACUCACACCG - 59
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249