Stem-loop rno-mir-182

Accession

MI0006133

Description

Rattus norvegicus rno-mir-182 precursor miRNA

Literature search

34 open access papers mention rno-mir-182
(302 sentences)

Sequence

3531269 reads, 4206 reads per million, 508 experiments

acgcgggucuagcugccggaggccucccaccguuUUUGGCAAUGGUAGAACUCACACCGgua
..(.(((((((.(((((((((((........))))))))))..).))).)))).).......

Structure

-----ac c    -   g --          cuc 
       g gggu cua c  ugccggaggc   c
       | |||| ||| |  ||||||||||    
       C CUCA GAU G  ACGGUUUuug   c
augGCCA A    A   G UA          cca 

Annotation confidence Not enough data

Genome context

chr4: 57459773-57459834 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-182

Mature rno-miR-182

• Accession: MIMAT0005300
• Description: Rattus norvegicus rno-miR-182 mature miRNA
• Sequence: 35 - UUUGGCAAUGGUAGAACUCACACCG - 59
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249