miRBase entry: rno-mir-196c

Stem-loop rno-mir-196c


Accession
MI0006136
Description
Rattus norvegicus rno-mir-196c precursor miRNA
Gene family
MIPF0000031; mir-196

Literature search
9 open access papers mention rno-mir-196c
(16 sentences)

Sequence

7284 reads, 43 reads per million, 188 experiments
cugagugaagUAGGUAGUUUCGUGUUGUUGGGccuggcuuucugaacACAACAACACCAAACCACCUGAuucacugcagu
(((((((((.(((((.((((.((((((((((..(.........)..).))))))))).)))).))))).)))))).))).

Structure
-   -      g     A    C         - Gc ugg 
 cug agugaa UAGGU GUUU GUGUUGUUG G  c   c
 ||| |||||| ||||| |||| ||||||||| |  |   u
 gac ucacuu GUCCA CAAA CACAACAAC c  g   u
u   g      A     C    C         A aa ucu 


Annotation confidence High
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Genome context
chr10: 84113578-84113657 [+]

Database links

Mature rno-miR-196c-5p

Accession MIMAT0005303
Description Rattus norvegicus rno-miR-196c-5p mature miRNA
Sequence 11 - UAGGUAGUUUCGUGUUGUUGGG - 32
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-196c-3p

Accession MIMAT0017299
Description Rattus norvegicus rno-miR-196c-3p mature miRNA
Sequence 48 - ACAACAACACCAAACCACCUGA - 69
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249