miRBase entry: rno-mir-375

Stem-loop rno-mir-375


Accession
MI0006140
Description
Rattus norvegicus rno-mir-375 precursor miRNA
Gene family
MIPF0000114; mir-375

Literature search
37 open access papers mention rno-mir-375
(234 sentences)

Sequence

1930053 reads, 2460 reads per million, 488 experiments
uccggccccGCGACGAGCCCCUCGCACAAACCggaccugagcguUUUGUUCGUUCGGCUCGCGUGAggcaggggc
(((.(((.((((.((((((...((.(((((.((........)).))))).))...)))))))))).))).)))..

Structure
--   g   c    A      CCU  C     C  gac 
  ucc gcc cGCG CGAGCC   CG ACAAA Cg   c
  ||| ||| |||| ||||||   || ||||| ||    
  ggg cgg GUGC GCUCGG   GC UGUUU gc   u
cg   a   A    -      CUU  U     u  gag 


Annotation confidence High
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Genome context
chr9: 82161716-82161790 [-]

Database links

Mature rno-miR-375-5p

Accession MIMAT0017301
Description Rattus norvegicus rno-miR-375-5p mature miRNA
Sequence 10 - GCGACGAGCCCCUCGCACAAACC - 32
Evidence experimental
SOLiD [2]

Mature rno-miR-375-3p

Accession MIMAT0005307
Description Rattus norvegicus rno-miR-375-3p mature miRNA
Sequence 45 - UUUGUUCGUUCGGCUCGCGUGA - 66
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249