miRBase entry: rno-mir-380

Stem-loop rno-mir-380


Accession
MI0006141
Description
Rattus norvegicus rno-mir-380 precursor miRNA
Gene family
MIPF0000126; mir-379

Literature search
6 open access papers mention rno-mir-380
(8 sentences)

Sequence

74472 reads, 118 reads per million, 352 experiments
accugaaaagAUGGUUGACCAUAGAACAUGCGcuacuucugugucgUAUGUAGUAUGGUCCACAUCUucucauuauc
...(((.((((((...(((((((..(((((((.(((....))).)))))))..)))))))..)))))).))).....

Structure
--acc   a      GUU       GA       c   u 
     uga aagAUG   GACCAUA  ACAUGCG uac u
     ||| ||||||   |||||||  ||||||| |||  
     acu uUCUAC   CUGGUAU  UGUAUgc gug c
cuauu   c      -AC       GA       u   u 


Annotation confidence High
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Genome context
chr6: 133860490-133860566 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from rno-mir-380
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-380-5p

Accession MIMAT0005308
Description Rattus norvegicus rno-miR-380-5p mature miRNA
Sequence 11 - AUGGUUGACCAUAGAACAUGCG - 32
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-380-3p

Accession MIMAT0017302
Description Rattus norvegicus rno-miR-380-3p mature miRNA
Sequence 47 - UAUGUAGUAUGGUCCACAUCU - 67
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249