miRBase entry: rno-mir-410

Stem-loop rno-mir-410


Accession
MI0006143
Description
Rattus norvegicus rno-mir-410 precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
9 open access papers mention rno-mir-410
(104 sentences)

Sequence

675622 reads, 605 reads per million, 473 experiments
acuugaggagAGGUUGUCUGUGAUGAGUUCGcuuuauuaaugacgAAUAUAACACAGAUGGCCUGUuuucaauacc
..(((((((.((((((((((((.((.((((((.........).))))).)).)))))))))))).)))))))....

Structure
--ac       g            A  A     - uuu 
    uugagga AGGUUGUCUGUG UG GUUCG c   a
    ||||||| |||||||||||| || ||||| |   u
    aacuuuU UCCGGUAGACAC AU UAAgc g   u
ccau       G            A  A     a uaa 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr6: 133893997-133894072 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from rno-mir-410
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-410-5p

Accession MIMAT0017303
Description Rattus norvegicus rno-miR-410-5p mature miRNA
Sequence 11 - AGGUUGUCUGUGAUGAGUUCG - 31
Evidence experimental
SOLiD [2]

Mature rno-miR-410-3p

Accession MIMAT0005311
Description Rattus norvegicus rno-miR-410-3p mature miRNA
Sequence 46 - AAUAUAACACAGAUGGCCUGU - 66
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249