Stem-loop rno-mir-411

Accession

MI0006144

Description

Rattus norvegicus rno-mir-411 precursor miRNA

Gene family

MIPF0000126; mir-379

Literature search

6 open access papers mention rno-mir-411
(10 sentences)

Sequence

2049057 reads, 1559 reads per million, 488 experiments

cuuggagagaUAGUAGACCGUAUAGCGUACGcuuuaucugugacgUAUGUAACACGGUCCACUAAcccucaguauc
....(((.(.((((.((((((...((((((((.........).)))))))...)))))).)))).).)))......

Structure

--cuug   a a    A      AUA       - uuu 
      gag g UAGU GACCGU   GCGUACG c   a
      ||| | |||| ||||||   ||||||| |   u
      cuc c AUCA CUGGCA   UGUAUgc g   c
cuauga   c A    C      CAA       a ugu 

Annotation confidence High

Genome context

chr6: 133858849-133858924 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from rno-mir-411

Mature rno-miR-411-5p

• Accession: MIMAT0005312
• Description: Rattus norvegicus rno-miR-411-5p mature miRNA
• Sequence: 11 - UAGUAGACCGUAUAGCGUACG - 31
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-411-3p

• Accession: MIMAT0017304
• Description: Rattus norvegicus rno-miR-411-3p mature miRNA
• Sequence: 46 - UAUGUAACACGGUCCACUAA - 65
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249