miRBase entry: rno-mir-423

Stem-loop rno-mir-423


Accession
MI0006145
Description
Rattus norvegicus rno-mir-423 precursor miRNA
Gene family
MIPF0000329; mir-423

Literature search
13 open access papers mention rno-mir-423
(125 sentences)

Sequence

424565 reads, 520 reads per million, 505 experiments
gaaguuaggcUGAGGGGCAGAGAGCGAGACUUUUcuauuuuccaaaAGCUCGGUCUGAGGCCCCUCAGUcuugcuuccu
(((((.((((((((((((..(((.((((.(((((.........))))))))).)))...)))))))))))).)))))..

Structure
--     u            -AG   G    A     cua 
  gaagu aggcUGAGGGGC   AGA CGAG CUUUU   u
  ||||| ||||||||||||   ||| |||| |||||   u
  cuucg ucUGACUCCCCG   UCU GCUC GAaaa   u
uc     u            GAG   G    -     ccu 


Annotation confidence High
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Genome context
chr10: 63098366-63098444 [+]

Database links

Mature rno-miR-423-5p

Accession MIMAT0017305
Description Rattus norvegicus rno-miR-423-5p mature miRNA
Sequence 11 - UGAGGGGCAGAGAGCGAGACUUUU - 34
Evidence experimental
SOLiD [2]

Mature rno-miR-423-3p

Accession MIMAT0005313
Description Rattus norvegicus rno-miR-423-3p mature miRNA
Sequence 47 - AGCUCGGUCUGAGGCCCCUCAGU - 69
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249