miRBase entry: rno-mir-425

Stem-loop rno-mir-425


Accession
MI0006146
Description
Rattus norvegicus rno-mir-425 precursor miRNA
Gene family
MIPF0000242; mir-425

Literature search
4 open access papers mention rno-mir-425
(7 sentences)

Sequence

229163 reads, 278 reads per million, 495 experiments
agugcuuuggAAUGACACGAUCACUCCCGUUGAgugggcacccaagaagccAUCGGGAAUAUCGUGUCCGCCcagugcucuuu
((.((.((((...((((((((...(((((....((((............)))))))))..))))))))...)))).)).))..

Structure
--  u  u    AAU        CAC     UUGA    gcacc 
  ag gc uugg   GACACGAU   UCCCG    gugg     c
  || || ||||   ||||||||   |||||    ||||      
  uc cg gacC   CUGUGCUA   AGGGC    UAcc     a
uu  u  u    CGC        -UA     ----    gaaga 


Annotation confidence High
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Genome context
chr8: 117354821-117354903 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-425
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-425-5p

Accession MIMAT0005314
Description Rattus norvegicus rno-miR-425-5p mature miRNA
Sequence 11 - AAUGACACGAUCACUCCCGUUGA - 33
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-425-3p

Accession MIMAT0017306
Description Rattus norvegicus rno-miR-425-3p mature miRNA
Sequence 52 - AUCGGGAAUAUCGUGUCCGCC - 72
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249