miRBase entry: rno-mir-500

Stem-loop rno-mir-500


Accession
MI0006153
Description
Rattus norvegicus rno-mir-500 precursor miRNA
Gene family
MIPF0000139; mir-500

Literature search
10 open access papers mention rno-mir-500
(51 sentences)

Sequence

9873 reads, 24 reads per million, 474 experiments
cccccucucuAAUCCUUGCUAUCUGGGUGCUUAGugcuaucucaaugcAAUGCACCUGGGCAAGGGUUCAgagaagguga
..((.((((((((((((((...((((((((....(((.........)))..))))))))))))))))).))))).))...

Structure
-cc  c     -         UAU        UUAG   uau 
   cc ucucu AAUCCUUGC   CUGGGUGC    ugc   c
   || ||||| |||||||||   ||||||||    |||   u
   gg agagA UUGGGAACG   GGUCCACG    Acg   c
agu  a     C         ---        --UA   uaa 


Annotation confidence High
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Genome context
chrX: 16121332-16121411 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from rno-mir-500
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-500-5p

Accession MIMAT0017311
Description Rattus norvegicus rno-miR-500-5p mature miRNA
Sequence 11 - AAUCCUUGCUAUCUGGGUGCUUAG - 34
Evidence experimental
SOLiD [2]

Mature rno-miR-500-3p

Accession MIMAT0005321
Description Rattus norvegicus rno-miR-500-3p mature miRNA
Sequence 49 - AAUGCACCUGGGCAAGGGUUCA - 70
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249