miRBase entry: rno-mir-671

Stem-loop rno-mir-671


Accession
MI0006156
Description
Rattus norvegicus rno-mir-671 precursor miRNA
Gene family
MIPF0000358; mir-671

Literature search
1 open access papers mention rno-mir-671
(1 sentences)

Sequence

23703 reads, 312 reads per million, 484 experiments
caggaagaggaggaagcccuggaggggcuggaggugauggauguuuuccUCCGGUUCUCAGGGCUCCACCucuuucgagcc
..((((((((.(((.((((((..(((((((((((.((.......)).)))))))))))))))))))).)))))))).....

Structure
---ca        a   a      ga           u  ug 
     ggaagagg gga gcccug  ggggcuggagg ga  g
     |||||||| ||| ||||||  ||||||||||| ||  a
     cuuucuCC CCU CGGGAC  UCUUGGCCUcc uu  u
ccgag        A   -      --           u  ug 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr4: 7108747-7108827 [-]

Database links

Mature rno-miR-671

Accession MIMAT0005326
Description Rattus norvegicus rno-miR-671 mature miRNA
Sequence 50 - UCCGGUUCUCAGGGCUCCACC - 70
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414