miRBase entry: rno-mir-674

Stem-loop rno-mir-674


Accession
MI0006159
Description
Rattus norvegicus rno-mir-674 precursor miRNA
Gene family
MIPF0000394; mir-674

Literature search
9 open access papers mention rno-mir-674
(25 sentences)

Sequence

38271 reads, 1012 reads per million, 487 experiments
ccugagccuuGCACUGAGAUGGGAGUGGUGUAaggcucagguaugCACAGCUCCCAUCUCAGAACAAggcucgggug
(((((((((((..(((((((((((((.(((((..((....)).))))).)))))))))))))..)))))))))))..

Structure
--           CA             G     ag  u 
  ccugagccuuG  CUGAGAUGGGAGU GUGUA  gc c
  |||||||||||  ||||||||||||| |||||  ||  
  gggcucggAAC  GACUCUACCCUCG CACgu  ug a
gu           AA             A     -a  g 


Annotation confidence High
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Genome context
chr3: 108864462-108864538 [+]

Database links

Mature rno-miR-674-5p

Accession MIMAT0005329
Description Rattus norvegicus rno-miR-674-5p mature miRNA
Sequence 11 - GCACUGAGAUGGGAGUGGUGUA - 32
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-674-3p

Accession MIMAT0005330
Description Rattus norvegicus rno-miR-674-3p mature miRNA
Sequence 46 - CACAGCUCCCAUCUCAGAACAA - 67
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249