miRBase entry: rno-mir-742

Stem-loop rno-mir-742


Accession
MI0006161
Description
Rattus norvegicus rno-mir-742 precursor miRNA
Gene family
MIPF0000412; mir-742

Literature search
2 open access papers mention rno-mir-742
(3 sentences)

Sequence

287 reads, 126 reads per million, 26 experiments
ggcagugcuuUACUCACAUGGUUGCUAAUCAcgugaaauguaaguGAAAGCCACCAUGUUGGGUAAAguaaagcuca
(((..(((((((((((((((((.(((..((((...........)))).))).)))))).)))))))))))..)))..

Structure
--   ag           -      U   AA    guga 
  ggc  ugcuuUACUCA CAUGGU GCU  UCAc    a
  |||  ||||||||||| |||||| |||  ||||    a
  ucg  augAAAUGGGU GUACCA CGA  AGug    u
ac   aa           U      C   -A    aaug 


Annotation confidence High
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Genome context
chrX: 151260313-151260389 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from rno-mir-742
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-742-5p

Accession MIMAT0017314
Description Rattus norvegicus rno-miR-742-5p mature miRNA
Sequence 11 - UACUCACAUGGUUGCUAAUCA - 31
Evidence experimental
SOLiD [2]

Mature rno-miR-742-3p

Accession MIMAT0005333
Description Rattus norvegicus rno-miR-742-3p mature miRNA
Sequence 46 - GAAAGCCACCAUGUUGGGUAAA - 67
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249