miRBase entry: rno-mir-652

Stem-loop rno-mir-652


Accession
MI0006169
Description
Rattus norvegicus rno-mir-652 precursor miRNA
Gene family
MIPF0000333; mir-652

Literature search
7 open access papers mention rno-mir-652
(9 sentences)

Sequence

34416 reads, 72 reads per million, 491 experiments
augcacugcACAACCCUAGGAGGGGGUGCCAUucacauagacuauaauugAAUGGCGCCACUAGGGUUGUGcaguguacaa
.((((((((((((((((((.....(((((((((((..((.....))..))))))))))).))))))))))))))))))...

Structure
--a                  GAGGG           ca  g 
   ugcacugcACAACCCUAG     GGUGCCAUuca  ua a
   ||||||||||||||||||     |||||||||||  || c
   augugacGUGUUGGGAUC     CCGCGGUAAgu  au u
aac                  ----A           ua  a 


Annotation confidence High
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Comments
The predominant miRNA cloned by Landgraf et al. has a 3' additional U residue, which is incompatible with the genome sequence [1].

Genome context
chrX: 114002534-114002614 [+]

Database links

Mature rno-miR-652-5p

Accession MIMAT0017321
Description Rattus norvegicus rno-miR-652-5p mature miRNA
Sequence 10 - ACAACCCUAGGAGGGGGUGCCAU - 32
Evidence experimental
SOLiD [2]

Mature rno-miR-652-3p

Accession MIMAT0005342
Description Rattus norvegicus rno-miR-652-3p mature miRNA
Sequence 51 - AAUGGCGCCACUAGGGUUGUG - 71
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249