miRBase entry: tae-MIR1117

Stem-loop tae-MIR1117


Accession
MI0006179
Description
Triticum aestivum tae-MIR1117 precursor miRNA

Literature search
7 open access papers mention tae-MIR1117
(18 sentences)

Sequence

9026 reads, 167 reads per million, 116 experiments
guuugaaaaugggaccuuUAGUACCGGUUCGUGGCACGAACCgggacuaaaggucucaaccccauuaguuccgguucgugccacaaaccgcgacuaaaagggaggagcuuuagucgc
...(((....((..((((((((..(((((.((((((((((((((((((((.((........)).)))))))))))))))))))).)))))..)))).....))))..))....))).

Structure
guu   aaau  ga    -----    AC     C                    a  ucu 
   uga    gg  ccuu     UAGU  CGGUU GUGGCACGAACCgggacuaa gg   c
   |||    ||  ||||     ||||  ||||| |||||||||||||||||||| ||    
   gcu    uc  ggag     auca  gccaa caccgugcuuggccuugauu cc   a
--c   gauu  ga    ggaaa    gc     a                    a  cca 


Annotation confidence Low
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Comments
Yao et al. misname this sequence miR501 in [1]. miR1117 is unrelated to mammalian miR-501;

Genome context
3B: 744964271-744964387 [+]

Database links

Mature tae-miR1117

Accession MIMAT0005352
Description Triticum aestivum tae-miR1117 mature miRNA
Sequence 19 - UAGUACCGGUUCGUGGCACGAACC - 42
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17543110
    Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
    Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
    Genome Biol (2007) 8:R96