miRBase entry: rno-mir-551b

Stem-loop rno-mir-551b


Accession
MI0006343
Description
Rattus norvegicus rno-mir-551b precursor miRNA
Gene family
MIPF0000360; mir-551

Literature search
6 open access papers mention rno-mir-551b
(12 sentences)

Sequence

9722 reads, 54 reads per million, 130 experiments
gugcucuuguggcccauGAAAUCAAGCUUGGGUGAGACCUgguacagaacaggaaGGCGACCCAUACUUGGUUUCAGUggcugcaagaauggcucuau
(.((((((((((((..((((((((((..(((((....((((........))))......)))))..))))))))))..))))))))))...)).)...

Structure
--- u  ---          ca          CU     --GAGA    gua 
   g gc   ucuuguggcc  uGAAAUCAAG  UGGGU      CCUg   c
   | ||   ||||||||||  ||||||||||  |||||      ||||    
   c cg   agaacgucgg  ACUUUGGUUC  ACCCA      ggac   a
uau u  gua          UG          AU     GCGGaa    aag 


Annotation confidence High
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Genome context
chr2: 116867647-116867744 [+]

Database links

Mature rno-miR-551b-5p

Accession MIMAT0017335
Description Rattus norvegicus rno-miR-551b-5p mature miRNA
Sequence 18 - GAAAUCAAGCUUGGGUGAGACCU - 40
Evidence experimental
SOLiD [2]

Mature rno-miR-551b-3p

Accession MIMAT0005596
Description Rattus norvegicus rno-miR-551b-3p mature miRNA
Sequence 56 - GGCGACCCAUACUUGGUUUCAGU - 78
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 17805466
    Cloning and identification of novel microRNAs from rat hippocampus
    "He X, Zhang Q, Liu Y, Pan X"
    "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714