Stem-loop sequence rno-mir-551b

Accession

MI0006343 (change log)

Description

Rattus norvegicus miR-551b stem-loop

Gene family

MIPF0000360; mir-551

Literature search

6 open access papers mention rno-mir-551b
(12 sentences)

Stem-loop

   --- u  ---     ug   ca          cu     - -aga    gua 
5'    g gc   ucuug  gcc  ugaaaucaag  ugggu g    ccug   c
      | ||   |||||  |||  ||||||||||  ||||| |    ||||    
3'    c cg   agaac  cgg  acuuugguuc  accca c    ggac   a
   uau u  gua     gu   ug          au     g ggaa    aag 

Deep sequencing

10519 reads, 12.4 reads per million, 137 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr2: 116867647-116867744 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir551b
• miRBase Tracker:MI0006343

Mature sequence rno-miR-551b-5p

• Accession: MIMAT0017335
• Previous IDs: rno-miR-551b*
• Sequence: 18 - gaaaucaagcuugggugagaccu - 40
• Deep sequencing: 224 reads, 54 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-551b-5p
  • miRDB:rno-miR-551b-5p

Mature sequence rno-miR-551b-3p

• Accession: MIMAT0005596
• Previous IDs: rno-miR-551b
• Sequence: 56 - ggcgacccauacuugguuucagu - 78
• Deep sequencing: 10290 reads, 135 experiments
• Evidence: experimental; cloned [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-551b-3p
  • miRDB:rno-miR-551b-3p
  • microrna.org:rno-miR-551b-3p

References

1. PMID:17805466 "Cloning and identification of novel microRNAs from rat hippocampus" He X, Zhang Q, Liu Y, Pan X Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).