miRBase entry: bra-MIR824

Stem-loop bra-MIR824


Accession
MI0006439
Description
Brassica rapa bra-MIR824 precursor miRNA
Gene family
MIPF0000442; MIR824

Literature search
5 open access papers mention bra-MIR824
(20 sentences)

Sequence

ccucgaguugucuuucaugucUAGACCAUUUGUGAGAAGGGAuuuuuuguuugcaccguucaccccacucucaaucuguagugaguauuaaggaaaauagcuuguucaacauaucacacuacucuuuuagaaacaaaacuauauuuuagaugcuuuuccagcuugauauacguuguuuuguuauguauaccuguauucucccggcuaccaaaacguuaagaaauaaggugaacaucuccccaaaaccugcauccaauuagaaaggucuaggucacagccauuacuugcuaucucucgauuaagcuauuuuauuucuaucaucaucaucagaucauucaggaguuaaguauaaaauaaaauacauuaaguccauucaugacauuucuggaugcugcauacauaauauuuuguuuuuggacuaugccacacuucggacagacauuuuuccuacgagaugucaaaccucugucuggaguguuagagguauuucaugauagcuaagaacuugaaucuugcacuacuuagcuacacuaguuuacuucauaguaaauaacuuggggaguggggaaggugcuggguuauuagucccuucucaucgauggucuagaugugcgaggugacucucauugagg
((((((((((((((.(((((((((((((((.(((((((((((((........(((((.....((((((((((.....((((((.((((((((........))))......))))..))))))...((((((((((((...(((((....((((.....................((((((..((((.(((((...((((..((..........))...))))...))))).)))).....))))))..(((((((....((((.(((..(((....))).......((((((....)))..))).........................((....)).(((.((((((((........)))).)))).)))......))).))))))))))).))))....)))))))))))))))))..(((((((((((((((((((((((((......)))))))).......))))))))))))....)))))....((.((((((((..................))))))))))...(((((((....)))))))......))))))))))..))))).........))))))))))))).))))))))))))))).)))))))))).....))))

Structure
    -----          u               U             -uuuuguuu     guuca          --------------------------------------------------------------------------------------aaucuguagugaguauuaaggaaaauagcuuguucaacauaucacacuacucu            acu     uuag    ------------------------------------------------------------------------------------------------------------------------------uuuuccagcuugauauacguu      ---uu    a     gua    -cc  gcua 
ccuc     gaguugucuu caugucUAGACCAUU GUGAGAAGGGAuu         gcacc     ccccacucuc                                                                                                                                           uuuagaaacaaa   auauu    augc                                                                                                                                                   guuuug     augu uaccu   uucu   cg    c
||||     |||||||||| ||||||||||||||| |||||||||||||         |||||     ||||||||||                                                                                                                                           ||||||||||||   |||||    ||||                                                                                                                                                   ||||||     |||| |||||   ||||   ||     
ggag     cucaguggag guguagaucugguag uacucuucccuga         cgugg     ggggugaggg                                                                                                                                           agguuuuuguuu   uauaa    uacg                                                                                                                                                   caaaac     uaca gugga   aaga   gc    c
    uuacu          c               c             uuauugggu     ---aa          guucaauaaaugauacuucauuugaucacaucgauucaucacguucuaaguucaagaaucgauaguacuuuauggagauugugaggucugucuccaaacuguagagcauccuuuuuacagacaggcuucacaccguauc            ---     uaca    ucguaggucuuuacaguacuuaccugaauuacauaaaauaaaauaugaauugaggacuuacuagacuacuacuacuaucuuuauuuuaucgaauuagcucucuaucguucauuaccgacacuggaucuggaaagauuaaccuacguc      cccuc    a     aua    auu  aaaa 


Annotation confidence Not enough data
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Genome context
chrA3: 25613141-25613772 [+]

Database links

Mature bra-miR824

Accession MIMAT0005598
Description Brassica rapa bra-miR824 mature miRNA
Sequence 22 - UAGACCAUUUGUGAGAAGGGA - 42
Evidence experimental
Northern [1]

References

  1. PubMed ID: 17704216
    MicroRNA-mediated regulation of stomatal development in Arabidopsis
    "Kutter C, Schob H, Stadler M, Meins F Jr, Si-Ammour A"
    "Plant Cell (2007) 19:2417-2429

  2. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146